PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JC2LL
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 539aa    MW: 59934.2 Da    PI: 5.9223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JC2LLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2219.1e-07288309223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  Aradu.JC2LL 288 FCTICGKGFKRDANLRMHMRGH 309
                  6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-5285312No hitNo description
SMARTSM003550.0026287309IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03287314IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5288338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280289309IPR007087Zinc finger, C2H2
SMARTSM0035553336369IPR015880Zinc finger, C2H2-like
SMARTSM0035537374396IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDGSNGGVDQ FWLCSVQKHD TVTELRFYMD PKGSLCSNNW ARSACLTSPG NGLQTNMSSD  60
PSPFCGVRVE APFKDFNQPS TNQSLLMAEP NKDIKISDIE NCPLTDSSSQ TGKLQDWDPN  120
VMLNNLSFLE EKIHQLQGLV HLIDNKKCQP FAQPDALVTQ EQQLITADLT SIIVQLISTA  180
GSLLPSVRHT LANTSPLVSQ LSQLRGLNLP FGSGPSGGIQ PQNNNVNKVF DQSTQNDVPN  240
NCELEQNNME EHETKDEEDV EEGENLPPGS YEILQLEKEE ILAPHTHFCT ICGKGFKRDA  300
NLRMHMRGHG DEYKTPAALA KPHKETGSEP KLIKRYSCPY AGCKRNKDHK KFQPLKTILC  360
VKNHYKRTHC DKSYTCSRCH TKKFSVMADL KTHEKHCGKD KWLCSCGTTF SRKDKLFGHI  420
ALFQGHTPAI PLEETKVPAV PTDLDSKDNT CDKVGNMNFC FGSNPPNENE VQNIMDVKGN  480
IDDPINYFSS LNFEGCNFGG FNEFSQSPFE DSDASFSFLM SGSFNYAPKP GGESTSDNL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942541.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0B2QAL30.0A0A0B2QAL3_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGGLYMA10G35940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-161C2H2 family protein